Useful Links

Islet gene expression

Gaulton Lab islet genomics http://www.gaultonlab.org/pages/Islet_expression_HPAP.html

Single cell RNA-seq data in purified islets from 65 donors in HPAP http://www.tools.cmdga.org:3838/islet-hpap-browser/

Sandberg lab single-cell gene expression atlas of human pancreatic islets in health and type 2 diabetes https://sandberglab.se/tool/pancreas

Huising Lab Integrated Human scRNA-Seq Studies https://huisinglab.com/diabetes_2019/index.html

Tabular Sapiens https://tabula-sapiens-portal.ds.czbiohub.org/

Human Protein Atlas https://www.proteinatlas.org/

Tabular Muris https://tabula-muris.ds.czbiohub.org/

Hydrogels

Appel Lab, Calculator for solute diffusion in hydrogels http://www.supramolecularbiomaterials.com/msdm-calculator

Appel Lab, Calculator for hydrogel extrudability http://www.supramolecularbiomaterials.com/extrudability

Peppas and Peyton Labs, Hydrogel Design Tools https://hydrogeldesign.com/

Statistics

G*power, tool to compute statistical power analyses https://www.psychologie.hhu.de/arbeitsgruppen/allgemeine-psychologie-und-arbeitspsychologie/gpower

Appel Lab Power Calculation http://www.supramolecularbiomaterials.com/study-power

Imaging/Cytometry

FPbase https://www.fpbase.org/

FluoroFinder https://fluorofinder.com/

OMIPs https://medicine.uiowa.edu/flowcytometry/resources/omips-optimized-panels

Leica SP8 tutorial https://www.epfl.ch/research/facilities/ptbiop/equipment/leica-sp8-in1/

ImageJ NeuroCyto Lab update site https://forum.image.sc/t/neurocyto-luts-update-site/26244

ImageJ update sites how to https://imagej.net/update-sites/

add the NeuroCyto Lab Update sites to your ImageJ for LUTs and great tools

Stardist – segmentation for ImageJ https://imagej.net/plugins/stardist

Cellpose – segmentation for ImageJ https://cellpose.readthedocs.io/en/latest/

https://imagej.net/plugins/trackmate/detectors/trackmate-cellpose

Data visualization

PlotsofData https://huygens.science.uva.nl/PlotsOfData/

Superplots https://rupress.org/jcb/article/219/6/e202001064/151717/SuperPlots-Communicating-reproducibility-and

https://huygens.science.uva.nl/SuperPlotsOfData/

https://www.molbiolcell.org/doi/10.1091/mbc.E20-09-0583

Scientific Writing

Broad Institute Journal Abstract https://mitcommlab.mit.edu/broad/commkit/journal-article-abstract/

Southern Fried Science how to write a good abstract https://www.southernfriedscience.com/distracted-by-abstracts-tips-for-writing-a-good-abstract-for-a-scientific-conference/

Nature, how to construct a Nature summary paragraph https://www.nature.com/documents/nature-summary-paragraph.pdf

Bioicons https://bioicons.com/

Image/Data Forensics

Forensically https://29a.ch/photo-forensics

Plot Digitizers https://plotdigitizer.com/

https://apps.automeris.io/wpd/

Video compression/conversion

Compress your microscopy videos for PPT pres. with handbrake software https://handbrake.fr/